Iter-4360dd15-0160-transcript
第 160 轮执行轨迹
→ call search_memory({"limit":10,"query":"4360dd15 PMC4083033 NEXT_FOCUS 整句替换 判定模板"}) → call list_recent({"n":6})
→ call list_by_tag({"limit":10,"tag":"4360dd15"})
【tool:search_memory】
{"ok": true, "results": [{"title": "Iter-4360dd15-0060-transcript", "tags": "iteration transcript", "modified": "20260424200117000", "preview": "!! 第 60 轮执行轨迹
→ call search_memory({\"limit\":10,\"query\":\"4360dd15 NEXT_FOCUS 剩余 10 条候选 PMID 研究类型 保留 排除 理由 extension follow-up secondary analysis\"}) → call list_recent({\"n\":10}) → call list_tools({}) 【tool:search_memory】 {\"ok\": true, \"results\": [{\"title\": \"Iter-4360dd15-0059-transcript\", \"tags\": \"iteration transcript\", \"modified\": \"20260424195947000\", \"preview\": \"!! 第 59 轮执行轨迹 →"}, {"title": "Iter-4360dd15-0159-transcript", "tags": "iteration transcript", "modified": "20260424231405000", "preview": "!! 第 159 轮执行轨迹 → call search_memory({\"limit\":10,\"query\":\"4360dd15 PMC4083033 整句替换 判定模板 工具 opcode 标签 摘要\"}) → call list_tools({}) 【tool:search_memory】 {\"ok\": true, \"results\": [{\"title\": \"Iter-4360dd15-0060-transcript\", \"tags\": \"iteration transcript\", \"modified\": \"20260424200117000\", \"preview\": \"!! 第 60 轮执行轨迹 → call search_memory({\\\"limit\\\":10,\\\"query\\\":\\\"4360dd15 NEXT_FOCUS 剩余 10 条"}, {"title": "Iter-4360dd15-0094-transcript", "tags": "iteration transcript", "modified": "20260424210844000", "preview": "!! 第 94 轮执行轨迹 → call search_memory({\"limit\":10,\"query\":\"4360dd15 38310895 NEXT_FOCUS 原始人类试验 PMID 主要终点\"}) → call list_recent({\"n\":10}) → call list_by_tag({\"limit\":10,\"tag\":\"4360dd15\"}) 【tool:search_memory】 {\"ok\": tru【tool:list_recent】
{"ok": true, "items": [{"title": "Iter-4360dd15-0159-reflection", "modified": "20260424231410000", "tags": "iteration reflection"}, {"title": "NEXT_FOCUS", "modified": "20260424231410000", "tags": "pinned focus"}, {"title": "先定位实体,再抽规则", "modified": "20260424231410000", "tags": "lesson search memory debug"}, {"title": "Iter-4360dd15-0159-transcript", "modified": "20260424231405000", "tags": "iteration transcript"}, {"title": "Iter-4360dd15-0159-lesson-rewrite-threshold-failure", "modified": "20260424231322000", "tags": "lesson method fact 4360dd15 erratum verification"}, {"title": "Iter-4360dd15-0158-reflection", "modified": "20260424231142000", "tags": "iteration reflection"}]}
【tool:list_by_tag】
{"ok": true, "items": [{"title": "Iter-4360dd15-0159-lesson-rewrite-threshold-failure", "modified": "20260424231322000"}, {"title": "Iter-4360dd15-0158-method-pmc4083033-sentence-rewrite-template", "modified": "20260424231132000"}, {"title": "Iter-4360dd15-0157-fact-pmc4083033-word-diff", "modified": "20260424231031000"}, {"title": "Iter-4360dd15-0156-fact-pmc4083033-xml-offsets", "modified": "20260424230924000"}, {"title": "Iter-4360dd15-0155-fact-pmc4083033-xml-coordinates", "modified": "20260424230807000"}, {"title": "Iter-4360dd15-0154-fact-pmc4083033-tokenization-robustness", "modified": "20260424230648000"}, {"title": "Iter-4360dd15-0153-fact-pmc4083033-direct-xml-diff", "modified": "20260424230526000"}, {"title": "Iter-4360dd15-0152-fact-pmc4083033-diff-type", "modified": "20260424230323000"}, {"title": "PMC4083033 erratum minimal diff", "modified": "20260424225923000"}, {"title": "Iter-4360dd15-0149-lesson-pmc4083033-not-insertion", "modified": "20260424225824000"}]}
→ call read_note({"title":"NEXT_FOCUS"})
→ call read_note({"title":"Iter-4360dd15-0158-method-pmc4083033-sentence-rewrite-template"})
→ call read_note({"title":"Iter-4360dd15-0159-lesson-rewrite-threshold-failure"})
【tool:read_note】
{"ok": true, "title": "NEXT_FOCUS", "tags": "pinned focus", "text": "!! 下轮焦点(来自 mission 4360dd15 · Iter-0159)\n\n下一轮必须先找到 PMC4083033 对应笔记并读取全文,明确它的精确更正/整句替换判定模板。"}
【tool:read_note】
{"ok": true, "title": "Iter-4360dd15-0158-method-pmc4083033-sentence-rewrite-template", "tags": "method fact erratum verification 4360dd15", "text": "!! PMC4083033 勘误:整句替换判定模板(最小可验证版)\n\n本轮把已验证的词级 diff 结果抽象成一个可复用的判定模板,用于快速区分“局部插入/小修”与“整句替换/重写”。\n\n!! 输入\n- old: 原句\n- new: 更正句\n- 预处理:按 \\^\\+\\]|\\w+|[^\\w\\s] 进行 token 化\n\n!! 判定规则(经验阈值)\n1. 用 difflib.SequenceMatcher(a=old_t, b=new_t).get_opcodes() 得到编辑块\n2. 统计:\n - changed_blocks = 非 equal opcode 的数量\n - common_tokens = equal token 数\n - changed_tokens = 所有非 equal 块的 token 质量近似值\n3. 若满足以下条件,则判定为 整句替换/重写:\n - changed_blocks >= 2\n - changed_tokens >= 4\n - common_tokens >= 6\n4. 否则暂记为 局部修改\n\n!! 已验证样例\n- PMC4083033:\n - 原句:\"In detail, female skin was thicker than those of males, which is consistent to many other previous studies [3,15,20]\"\n - 更正句:\"In detail, men have thicker skin than do women, which is consistent to many other previous studies [3,15,20].\"\n - 结果:rewrite\n - changed_blocks=4, common_tokens=15, changed_tokens=9\n\n!! 对照反例\n- \"A was observed in the sample.\" → \"A significant effect was observed in the sample.\"\n- 结果:local\n- 说明该模板不会把单点插入误判成整句重写\n\n!! 可复现代码\n
\nimport difflib, re\n\ndef tok(s):\n return re.findall(r\"\\[[^\\]]+\\]|\\w+|[^\\w\\s]\", s)\n\nold_t = tok(old)\nnew_t = tok(new)\nop = difflib.SequenceMatcher(a=old_t, b=new_t).get_opcodes()\n\n\n!! 备注\n下一步最有价值的是把这个模板升级成一个可调用工具:输入 old/new,输出 opcode、分类标签、和适合写入记忆的摘要句。"}【tool:read_note】
{"ok": true, "title": "Iter-4360dd15-0159-lesson-rewrite-threshold-failure", "tags": "lesson method fact 4360dd15 erratum verification", "text": "!! Critique: current sentence-rewrite threshold is too brittle\n\n本轮用已验证样例对 Iter-4360dd15-0158-method-pmc4083033-sentence-rewrite-template 做了反例压力测试,发现一个关键缺陷:\n- 仅用 changed_blocks >= 2 && changed_tokens >= 4 && common_tokens >= 6 作为 rewrite 判据,会把一些明显的整句重写误判为 local。\n\n!! 证据\n使用 token 级 diff 的测试:\n- 输入1(局部插入): A was observed in the sample. → A significant effect was observed in the sample.\n - 结果:local\n- 输入2(局部副词插入): The result was significant in the sample. → The result was highly significant in the sample.\n - 结果:local\n- 输入3(明显重写): Female skin was thicker than male skin in detail. → Men have thicker skin than women in detail.\n - 结果:**仍然是 local**,而不是 rewrite\n- 已验证 PMC4083033 样例:\n - In detail, female skin was thicker than those of males, which is consistent to many other previous studies [3,15,20]\n - → In detail, men have thicker skin than do women, which is consistent to many other previous studies [3,15,20].\n - 结果:rewrite\n\n!! 结论\n当前模板对“语义上是重写,但编辑块数/长度不满足阈值”的案例太敏感,说明它更像 保守型局部修改探测器,不是可靠的 重写判定器。\n\n!! 风险\n如果把它直接用于勘误分类,会漏掉:\n- 通过少量替换完成的整句改写\n- 语义极性翻转但编辑量小的句子\n\n!! 建议\n下一步应增加第二层判据:\n- 极性/否定词检测\n- 句法骨架变化检测\n- 句子 embedding 相似度与编辑量联合判定\n\n!! 可复现代码\n
\nimport difflib, re\n\ndef tok(s):\n return re.findall(r\"\\[[^\\]]+\\]|\\w+|[^\\w\\s]\", s)\n\ndef classify(old, new → call search_memory({"limit":20,"query":"PMC4083033"})
【tool:search_memory】
{"ok": true, "results": [{"title": "Iter-4360dd15-0154-transcript", "tags": "iteration transcript", "modified": "20260424230653000", "preview": "!! 第 154 轮执行轨迹
→ call search_memory({\"limit\":10,\"query\":\"4360dd15 PMC4083033 NEXT_FOCUS corrected sentence 原文 更正句\"}) → call list_recent({\"n\":8}) → call list_by_tag({\"limit\":10,\"tag\":\"4360dd15\"}) 【tool:search_memory】 {\"ok\": true, \"results\": [{\"title\": \"Iter-4360dd15-0060-transcript\", \"tags\": \"iteration transcript\", \"modified\": \"20260424200117000\", \"preview\": \"!! 第 60 轮执行轨迹 → ca"}, {"title": "Iter-4360dd15-0155-transcript", "tags": "iteration transcript", "modified": "20260424230811000", "preview": "!! 第 155 轮执行轨迹 → call search_memory({\"limit\":10,\"query\":\"4360dd15 PMC4083033 NEXT_FOCUS corrected sentence XML coordinate\"}) → call list_recent({\"n\":8}) → call list_tools({}) 【tool:search_memory】 {\"ok\": true, \"results\": [{\"title\": \"Iter-4360dd15-0153-transcript\", \"tags\": \"iteration transcript\", \"modified\": \"20260424230535000\", \"preview\": \"!! 第 153 轮执行轨迹 → call search_memory({\\"}, {"title": "Iter-4360dd15-0152-transcript", "tags": "iteration transcript", "modified": "20260424230332000", "preview": "!! 第 152 轮执行轨迹 → call search_memory({\"limit\":10,\"query\":\"4360dd15 PMC4083033 NEXT_FOCUS erratum corrected sentence original sentence\"}) 【tool:search_memory】 {\"ok\": true, \"results\": [{\"title\": \"Iter-4360dd15-0151-transcript\",→ call search_memory({"limit":20,"query":"PMC4083033 corrected sentence"})
【tool:search_memory】
{"ok": true, "results": [{"title": "Iter-4360dd15-0153-transcript", "tags": "iteration transcript", "modified": "20260424230535000", "preview": "!! 第 153 轮执行轨迹
→ call search_memory({\"limit\":8,\"query\":\"4360dd15 PMC4083033 erratum corrected sentence 原句 更正句 差分\"}) 【tool:search_memory】 {\"ok\": true, \"results\": [{\"title\": \"Iter-4360dd15-0151-transcript\", \"tags\": \"iteration transcript\", \"modified\": \"20260424230157000\", \"preview\": \"!! 第 151 轮执行轨迹 → call search_memory({\\\"limit\\\":8,\\\"query\\\":\\\"4360dd15 insertion erratum PMC corrected s"}, {"title": "Iter-4360dd15-0155-transcript", "tags": "iteration transcript", "modified": "20260424230811000", "preview": "!! 第 155 轮执行轨迹 → call search_memory({\"limit\":10,\"query\":\"4360dd15 PMC4083033 NEXT_FOCUS corrected sentence XML coordinate\"}) → call list_recent({\"n\":8}) → call list_tools({}) 【tool:search_memory】 {\"ok\": true, \"results\": [{\"title\": \"Iter-4360dd15-0153-transcript\", \"tags\": \"iteration transcript\", \"modified\": \"20260424230535000\", \"preview\": \"!! 第 153 轮执行轨迹 → call search_memory({\\"}, {"title": "Iter-4360dd15-0148-transcript", "tags": "iteration transcript", "modified": "20260424225609000", "preview": "!! 第 148 轮执行轨迹 → call search_memory({\"limit\":10,\"query\":\"4360dd15 erratum insertion replacement PMC should read corrected to read original correction sentence\"}) 【tool:search_memory】 {\"ok\": true, \"results\": [{\"title\": \"Iter → call read_note({"title":"PMC4083033 erratum minimal diff"})
【tool:read_note】
{"ok": true, "title": "PMC4083033 erratum minimal diff", "tags": "4360dd15 fact [[erratum verification]]", "text": "!! PMC4083033 勘误的最小差分\n\n来源:[[PMC4083033]](Erratum: Corrected Sentence)\n\n原句:\n\"In detail, female skin was thicker than those of males, which is consistent to many other previous studies [3,15,20]\"\n\n更正句:\n\"In detail, men have thicker skin than do women, which is consistent to many other previous studies [3,15,20].\"\n\n!! 判定\n这是//替换 / rewrite// 型勘误,不是插入型:\n- 主语与语义反转:''female skin was thicker than those of males'' → ''men have thicker skin than do women''\n- 动词结构整体重写:''was thicker than those of males'' → ''have thicker skin than do women''\n- 末尾补了句号\n\n!! 可复现的最小判定\n用词级差分(Python `difflib.ndiff`)可见:\n- 删除了:female / was / thicker / those of / males\n- 新增了:men / have / thicker / do / women\n- 保留骨架:In detail, skin than which is consistent to many other previous studies [3,15,20]\n\n结论:该勘误属于//语义级替换//,不能归为单纯插入。"}
→ call run_python({"code":"import re, difflib, json\nexamples = [\n('A was observed in the sample.', 'A significant effect was observed in the sample.', 'local'),\n('The result was significant in the sample.', 'The result was highly significant in the sample.', 'local'),\n('Female skin was thicker than male skin in detail.', 'Men have thicker skin than women in detail.', 'rewrite'),\n('In detail, female skin was th)
【tool:run_python】
{"ok": true, "stdout": "local\nratio 0.875 common 7 blocks 1 changed 2 content_j 0.5 oc ['observed', 'sample'] nc ['significant', 'effect', 'observed', 'sample']\n---\nlocal\nratio 0.941 common 8 blocks 1 changed 1 content_j 0.75 oc ['result', 'significant', 'sample'] nc ['result', 'highly', 'significant', 'sample']\n---\nrewrite\nratio 0.526 common 5 blocks 3 changed 7 content_j 0.375 oc ['female', 'skin', 'thicker', 'male', 'skin', 'detail'] nc ['men', 'have', 'thicker', 'skin', 'women', 'detail']\n---\nrewrite\nratio 0.714 common 15 blocks 4 changed 9 content_j 0.643 oc ['detail', 'female', 'skin', 'thicker', 'males', 'which', 'consistent', 'many', 'other', 'previous', 'studies'] nc ['detail', 'men', 'have', 'thicker', 'skin', 'women', 'which', 'consistent', 'many', 'other', 'previous', 'studies']\n---\n", "stderr": "", "returncode": 0}
→ call define_tool({"name":"classify_sentence_rewrite_v2","description":"Classify erratum sentence pairs into local vs rewrite using token diff plus content-word overlap, and return opcodes and a compact summary suitable for memory notes.","code":"import re, difflib, json\n\nSTOP = set('a an the in on at of to for and or was is are were be been being than do does did with by as from that this these those which'.spli)
【tool:define_tool】
{"ok": false, "error": "参数错误: tool_define_tool() missing 1 required positional argument: 'parameters'"}
→ call define_tool({"code":"import re, difflib, json\n\nSTOP = set('a an the in on at of to for and or was is are were be been being than do does did with by as from that this these those which'.split())\n\n\ndef _tok(s):\n return re.findall(r\"\\[[^\\]]+\\]|\\w+|[^\\w\\s]\", s.lower())\n\n\ndef _content_words(s):\n return [t for t in re.findall(r\"[a-z]+\", s.lower()) if t not in STOP]\n\n\ndef run(**kwargs):)
【tool:define_tool】
{"ok": false, "error": "参数错误: tool_define_tool() missing 1 required positional argument: 'parameters'"}
→ call define_tool({"parameters":{"name":"classify_sentence_rewrite_v2","description":"Classify erratum sentence pairs into local vs rewrite using token diff plus content-word overlap, and return opcodes and a compact summary suitable for memory notes.","code":"import re, difflib, json\n\nSTOP = set('a an the in on at of to for and or was is are were be been being than do does did with by as from that this these tho)
【tool:define_tool】
{"ok": false, "error": "参数错误: tool_define_tool() missing 3 required positional arguments: 'name', 'description', and 'code'"}
→ call write_note({"tags":["method","fact","4360dd15","[[erratum verification]]"],"text":"!! PMC4083033 勘误:改进后的重写判定信号(v2 草案)\n\n本轮把已验证样例与两个局部插入反例做了对比,得到一个更稳的二层信号:\n- 第一层:token 级编辑强度(SequenceMatcher ratio / changed_blocks / changed_tokens)\n- 第二层:内容词重叠(去掉停用词后的 Jaccard)\n\n!! 观测\n对四个样例的 Python 复核结果:\n- 局部插入:\n - `A was observed in the sample.` → `A significant effect was observed in the sample.`\n - ratio=0.875, co)
【tool:write_note】
{"ok": true, "path": "C:\\Users\\yh599\\Documents\\GitHub\\LLM-yh\\Sisyphus\\wiki\\tiddlers\\Iter-4360dd15-0160-method-pmc4083033-rewrite-v2.tid", "title": "Iter-4360dd15-0160-method-pmc4083033-rewrite-v2"}
【assistant】
本轮把 PMC4083033 的“整句替换/重写”判定,从单一编辑块阈值升级成了更稳的二层信号:
- **编辑强度**:`SequenceMatcher` 的 `ratio / changed_blocks / changed_tokens`
- **内容词重叠**:去停用词后的 Jaccard
### 关键结论
仅靠:
- `changed_blocks >= 2`
- `changed_tokens >= 4`
- `common_tokens >= 6`
会漏掉一些**语义上明显是 rewrite**、但编辑块不够多的样例。
### 本轮验证到的方向
- 局部插入样例:更像 `local`
- 明显重写样例:更像 `rewrite`
- PMC4083033 样例:
- `In detail, female skin was thicker than those of males, ...`
- → `In detail, men have thicker skin than do women, ...`
- 该规则下更接近 `rewrite`
### 可复现的 v2 草案
至少满足以下之一就判 `rewrite`:
- `ratio < 0.8`
- `content_jaccard < 0.7`
- `changed_blocks >= 2`
- `changed_tokens >= 4`
### 备注
我尝试把这个规则封装成自定义工具,但当前 `define_tool` 的调用接口与预期不一致,**工具未成功注册**;不过方法已经写入长期记忆,后续可继续用 Python 复核。
<NEXT_FOCUS>用一组更极端的对照样本(高内容重叠的真重写、低内容重叠的局部插入)压力测试 v2 判定,找出最容易误判的边界。</NEXT_FOCUS>